Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADRNQRKVYTGRVVSDKMDKTITVVVETYKKHGLYGKRVKYSKKFKAHDENNIAKTGDVVRISETRPLSATKHFRLLEVVEEAVII
4WT8 Chain:R ((2-79))
------KKVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESG---
General information:
TITO was launched using:
RESULT:
Template:
4WT8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6739 for 474 contacts (-14.2/contact) +
2D Compatibility (PS) -8418 + (NN) -521 + (LL) 1016
1D Compatibility (HY) -7600 + (ID) 2200
Total energy: -24462.0 ( -51.61 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_4WT8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WT8-query.scw
PDB file :
Tito_Scwrl_4WT8.pdb
: