Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence------------------------------MDSAYVFDSEQATKLLMKNYELVKTSGVSFIDKRIRFLIARLFAGNNEVVNPE----------RFNEINKE--IKRQLGMFTAL-NGNVRASLVGLLMANNNASRE--------------SVQQVIANYNTLIQAGFQRTEYTYFAAYLLLESENPTKTAQKAKTIHQLFKKDHPFLTKSEDVTTAVFLANLPEENTTE--LAEVTEYYFQEFAAKGFRKNDSLQFLATTGTLLYGEKDSKFIRRVDNIVEELRQKGIKVKPIHYSSIGILAFVMDGRKIDSGLVNLIDELQQQPGLRFGREFVTALAISLYTEKQS---GQMSKEQLEGLMVNVHILIAMEQAAAVSAAAAASAAAASS--
1Q9J Chain:A ((1-418))MFPGSVIRKLSHSEEVFAQYEVFTSMTIQLRGVIDVDALSDAFDALLETHPVLASHLEQSSDGGWNLVADDLLHSGICVIDAELRLDQSVSLLHLQLILREGGAELTLYLHHCMADGHHGAVLVDELFSRYTDAVTTGDPGPITPQPTPLSMEAVLAQRGIRKAERFMSVMYAYPGLPQAVPVTRLWLSKQQTSDLMAFGREHR--LSLNAVVAAAILLTEWQLRNTPHVPIPYVYPVDLRFVLAPPVAPTEATNLLGAASYLAEIGPNTDIVDLASDIVATLRADLAN-GVIQQSGLH-FGTAFEGTPPGLPPLVFCTDATSFPTMRTPPGLEIEDIKGQFYCSISVPLDLYSCAVYAGQLIIEHHGHIAEPGKSLEAIRSLLCTVPSEYG


General information:
TITO was launched using:
RESULT:

Template: 1Q9J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3510 for 2383 contacts (1.5/contact) +
2D Compatibility (PS) -33355 + (NN) 1529 + (LL) 388
1D Compatibility (HY) -8400 + (ID) 2400
Total energy: -38728.0 ( -16.25 by residue)
QMean score : 0.247

(partial model without unconserved sides chains):
PDB file : Tito_1Q9J.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1Q9J-query.scw
PDB file : Tito_Scwrl_1Q9J.pdb: