Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFLDKELVNLHGSAKNADEAIVQAGELLVNAGYVSEQYVEKMVESYHENGAYFVIAP-QIAIPHARPTDG--VENSAVSLVVLKDGVNFGHAAND----PVRLVFGLAATSSEAHLKVIQKIVSLLSNNDNIEKMIHSED---YQAIGELVEG
3T43 Chain:A ((15-131))
----------------------------LINDGMVVSDFADHVITREQNAPTGLPVEPVGVAIPH---TDSKYVRQNAISVGILAEPVNFEDAGGEPDPVPVRVVFMLALGNWFDITNVLWWIMDVIQDADFMQQLLVMNDDEIYQSI------
General information:
TITO was launched using:
RESULT:
Template:
3T43.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87619 for 684 contacts (-128.1/contact) +
2D Compatibility (PS) -11341 + (NN) -2145 + (LL) 2436
1D Compatibility (HY) -11200 + (ID) 1650
Total energy: -111519.0 ( -163.04 by residue)
QMean score : 0.571
(partial model without unconserved sides chains):
PDB file :
Tito_3T43.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3T43-query.scw
PDB file :
Tito_Scwrl_3T43.pdb
: