Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKMIVGLGNPGSKYNDTKHNIGFMAVDRIVKDLDVNFTEDKNFKAEIGSDFINGEKIYFIKPTTFMNNSGIAVKALLTYYNISIKDMIIIYDDLDMEVGKIRFRQKGSAGGHNGIKSIIAHLGTQEFDRIKVGIGRPNGRMTVINHVLGKFDKNDEIMILNTLDKVDNAVNYYLQTNDFQKTMQKYNGLK
4LWQ Chain:A ((7-194))
-ISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHIGP-NFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQ-GQVPQAMNQINAYK
General information:
TITO was launched using:
RESULT:
Template:
4LWQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120962 for 1595 contacts (-75.8/contact) +
2D Compatibility (PS) -19540 + (NN) -4657 + (LL) 380
1D Compatibility (HY) -14800 + (ID) 3300
Total energy: -162879.0 ( -102.12 by residue)
QMean score : 0.547
(partial model without unconserved sides chains):
PDB file :
Tito_4LWQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LWQ-query.scw
PDB file :
Tito_Scwrl_4LWQ.pdb
: