Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKDLQKYQGIIPAFYACYDDKGDICPERVKALTNYFIDKGVQGLYVNGSSGECIYQSVADRKLVLENVMSVAKGKLTVIAHVACNNTKDSVELAMHAEAIGVDAIAAIPPIYFRLPEYAIADYWNTISQAAPQTDFIIYNIPQLAGVALTSDLYRKMLQNPQVIGVKNSSMPVQDIQNFVAIGGENH--IVFNGPDEQFLGGRLMGAAAGIGGTYGVMPELYLTLNQLIVDKDLEKARELQFTINDIITKLCSGHGNMYAVIKSVLEINEQLTIGSVRLPLASVTEEDKPIIKEAAEMIRHAKKQFC |
3LCW Chain:A ((28-316)) | -------RGVMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSERAQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRHGFDAVSAVTPFYYPFSLEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLGQIYTLVTLPGVGALKQTS---GDLYQMEQIRREHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQGIVKALKEGDIQTAQKLQTECNKVIDLLIK--TGIFRGLKTVLHYMDVISVPLCRKPFGPVDEKCLPELKALAQQLMQ------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LCW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -207876 for 2567 contacts (-81.0/contact) +
2D Compatibility (PS) -30895 + (NN) -13506 + (LL) 1360
1D Compatibility (HY) -22400 + (ID) 4650
Total energy: -277967.0 ( -108.28 by residue)
QMean score : 0.578
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