Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTRTVAIDIGGTMIKHGIVDNLGCIVEASELATEAYKGGPGILQKVCQIIDNYLTEGSIDG-IAISSAGMVDPDEGCIFYSGPQIPNYAGTQFKKVLEDTYQVRTEIENDVNCAGLAEAVSGSAKDSSIALCLTIGTGIGGCLIIDKTVFHGFSNSACEVGYMHLS-------DGDFQDLASTTALIADVAKAHGDEISRWDGRRIFQEA----------KEGNEKCIASIDRMINYLGQGIANMVYVVNPEKVVLGGGIMAQKDYLQDKLSESLKRNLVTSLAEKTAIVFAQHENQAGMLGAYYHFKNRG |
| 2AP1 Chain:A ((29-322)) | ------FDIGGTKIALGVFDSTRRLQWEKRVPT-PHTSYSAFLDAVCELVEEADQRFGVKGSVGIGIPGMPETEDGTLYAA--NVPAASGKPLRADLSARLDRDVRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLVLNGKPITGQSYITGEFGHMRLPVDALTLMGFDFPLRRCGCGQMGCIENYLSGRGFAWLYQHYYDQSLQAPEIIALWEQGDEQAHAHVERYLDLLAVCLGNILTIVDPDLLVIGGG-LSNFTAITTQLAERLPRHLL-PVARAPRIERARHGDAGGMRGAAFLHLTD- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2AP1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -173971 for 2245 contacts (-77.5/contact) +
2D Compatibility (PS) -28578 + (NN) -1935 + (LL) 840
1D Compatibility (HY) -14800 + (ID) 3400
Total energy: -221844.0 ( -98.82 by residue)
QMean score : 0.436
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