Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLLIMGLPGAGKGTQAAKIVEEFGVAHISTGDMFRAAMANQTEMGRLAKSYIDKGELVPDEVTNGIVKERLAEDDIAEKGFLLDGYPRTIEQAHALDATLEELGLRLDGVINIKVDPSCLIERLSGRIINRKTGETFHKVFNPP-----VDYKEEDYYQREDDKPETVKRRLDVNIAQGEPILEHYRKLGLVTDIEGNQEITEVFADVEKALLELK
4MKG Chain:A ((1-216))
MNIVLMGLPGAGKGTQAERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVRERLSKSD-CERGFLLDGFPRTVAQAEALEEILEEMGRPIDYVINIQVDKEELMERLTGRRICSVCGTTYHLVFNPPKTPGICDKDGGELYQRADDNEETVTKRLEVNMKQTAPLLAFYDSKEVLVNVNGQQDIQDVFADVKVILGGLK
General information:
TITO was launched using:
RESULT:
Template:
4MKG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67090 for 1655 contacts (-40.5/contact) +
2D Compatibility (PS) -22850 + (NN) -10760 + (LL) 204
1D Compatibility (HY) -22000 + (ID) 6150
Total energy: -128646.0 ( -77.73 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_4MKG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MKG-query.scw
PDB file :
Tito_Scwrl_4MKG.pdb
: