Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAYRKLGRTSSQRKAMLRDLTTDLLINESIVTTEARAKEIRKTVEKMITLGKRGDLHARRQAAAYVRNEIASENYDEASDKYTSTTALQKLFDDIAPRYAERNGGYTRILKTEPRRGDAAPMAIIELV
1NWY Chain:L ((6-116))
-AGRKLNRNSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRL--------VAQDIHDK--------DVVRKVMDEVAPKYAERPGGYTRILRVGTRRGDGVTMALIELV
General information:
TITO was launched using:
RESULT:
Template:
1NWY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 998577 for 5151 contacts (193.9/contact) +
2D Compatibility (PS) -10504 + (NN) 849 + (LL) 1320
1D Compatibility (HY) 4800 + (ID) 650
Total energy: 994392.0 ( 193.05 by residue)
QMean score : ?
(partial model without unconserved sides chains):
PDB file :
Tito_1NWY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NWY-query.scw
PDB file :
Tito_Scwrl_1NWY.pdb
: