Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKVCYFTGRKTVSGNN---RSHAMNQ----------TKRTVKPNLQKVTVLIDGKPKKVWVSARALKSGKVERV
4IOC Chain:U ((8-69))
-------TGKKNLVVNSVIRRGKARADGGVGRKTTGITKRVQRANLHKKAIRENGQVKTVWLSANALRTLSKGPY
General information:
TITO was launched using:
RESULT:
Template:
4IOC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 9319 for 220 contacts (42.4/contact) +
2D Compatibility (PS) -5101 + (NN) 369 + (LL) 888
1D Compatibility (HY) -800 + (ID) 1000
Total energy: 3675.0 ( 16.70 by residue)
QMean score : 0.307
(partial model without unconserved sides chains):
PDB file :
Tito_4IOC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4IOC-query.scw
PDB file :
Tito_Scwrl_4IOC.pdb
: