Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRRKSMTTTFKIIRGYYLTGVGQEPSAYYFKIRDDFPEFETLKSGDVALTFY-QNGEAIT----------SLPALIRIDGVIEAEKQVLEFLQSEKKDHLPMLPLVALYEQFDPLQFNTVMEVFDNLKAEIKRLAKVNYVQGDLFDFMQEGEG
2GNP Chain:A ((186-225))
------------------------------------------TVGEICCRFFDSKGKEVYENLQERTIAISLEDLKNIPQSLAVAYGDTKVSSILSVLRANLVNHLITDKNTILKVLEEDGD-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2GNP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8960 for 124 contacts (-72.3/contact) +
2D Compatibility (PS) -3099 + (NN) -1187 + (LL) 5840
1D Compatibility (HY) -2800 + (ID) 350
Total energy: -10556.0 ( -85.13 by residue)
QMean score : 0.028
(partial model without unconserved sides chains):
PDB file :
Tito_2GNP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GNP-query.scw
PDB file :
Tito_Scwrl_2GNP.pdb
: