Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MALAKIVYASMTGNTEEIADIVADKLRDLGLDVEVEECTMVDAAD-FEDADIAIVATYTYGDG--DLPDEIVDFYEDLAEVDLSGKVYGVVGSGDTFYDYFCKSVDEFEAQFALTGAQKGADCVKVDLAAEDEDIENLEAFAEEIASKLN
5FX2 Chain:A ((1-126))
-AKALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEAGGLFEGFDLVLLGCSTWGDDSIELQDDFIPLFDSLEETGAQGRKVACFGCGDSSYEYFCGAVDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGAI--
General information:
TITO was launched using:
RESULT:
Template:
5FX2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78727 for 993 contacts (-79.3/contact) +
2D Compatibility (PS) -13193 + (NN) -3774 + (LL) 528
1D Compatibility (HY) -6400 + (ID) 2200
Total energy: -103766.0 ( -104.50 by residue)
QMean score : 0.538
(partial model without unconserved sides chains):
PDB file :
Tito_5FX2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5FX2-query.scw
PDB file :
Tito_Scwrl_5FX2.pdb
: