Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEFTFEIVEKLLVLSENEKGWTKELNRVSFNGAPAKFDLRTWSPDHTKMGKGITLSNEEFKVILDAFRK
1VSQ Chain:C ((115-138))
---------------------------------------------GKTQVNNAVSVDEKDIEAFKKLNAR
General information:
TITO was launched using:
RESULT:
Template:
1VSQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3941 for 102 contacts (-38.6/contact) +
2D Compatibility (PS) -2642 + (NN) -1647 + (LL) 3180
1D Compatibility (HY) -800 + (ID) 50
Total energy: -5900.0 ( -57.84 by residue)
QMean score : 0.511
(partial model without unconserved sides chains):
PDB file :
Tito_1VSQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VSQ-query.scw
PDB file :
Tito_Scwrl_1VSQ.pdb
: