Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVKLVFARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIQAAGIEFDLAFTSVLKRAIKTTNLALEAADQLWVPVEKSWRLNERHYGGLTGKNKAEAAEQFGDEQVHIWRRSYDVLPPDMAKDDEHSAHTDRRYASLDDSVIPDAENLKVTLERALPFWEDKIAPALKDGKNVFVGAHGNSIRALVKHIKQLSDDEIMDVEIPNFPPLVFEFDEKLNLVSEYYLGK
4EMB Chain:A ((29-255))
--KLVLVRHGESEWNKENLFTGWTDVKLSDKGIDEAVEAGLLLKQEGYSFDIAFSSLLSRANDTLNIILRELGQSYISVKKTWRLNERHYGALQGLNKSETAAKYGEDKVLIWRRSYDVPPMSLDESDDRHPIKDPRYKHIPKRELPSTECLKDTVARVIPYWTDEIAKEVLEGKKVIVAAHGNSLRALVKYFDNLSEEDVLKLNIPTGIPLVYELDKDLNPIKHYYLGD
General information:
TITO was launched using:
RESULT:
Template:
4EMB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62952 for 1857 contacts (-33.9/contact) +
2D Compatibility (PS) -24445 + (NN) -5118 + (LL) 400
1D Compatibility (HY) -23200 + (ID) 5650
Total energy: -120965.0 ( -65.14 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_4EMB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EMB-query.scw
PDB file :
Tito_Scwrl_4EMB.pdb
: