Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKDKYIV-LCLLCAIATSNLSAVTVFAQDAQTILTQATTVTDQTSEKAGENSSAEATSASESVSSEATTVVPEASLPSTDLHAQPADSKTAPTETVIEGQTETNPTTSPDKQFLQQAIPKEKHRLGRKQIQANPKLQLLVSL
3U4E Chain:G ((1-122))
MTTFKLAACVTLRCTNATINGS----LTEEVKNCSFNITTELRDKKQKAYALFYRPSEYILINCQTTTTEAVDAATAAKVFKQYANDNG--------IDGEWTYDDAT--------------------KTFTVTEGLEVL---
General information:
TITO was launched using:
RESULT:
Template:
3U4E.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 21599 for 667 contacts (32.4/contact) +
2D Compatibility (PS) -10690 + (NN) 5317 + (LL) 2616
1D Compatibility (HY) -1200 + (ID) 1050
Total energy: 16592.0 ( 24.88 by residue)
QMean score : 0.079
(partial model without unconserved sides chains):
PDB file :
Tito_3U4E.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U4E-query.scw
PDB file :
Tito_Scwrl_3U4E.pdb
: