Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQMNFTDRATRVAIIANGKYQSKRVASKLFAAFKHDPDFYLSKKDPDIVISIGGDGMLLSAFHMYEKQLDKVRFVGVHTGHLGFYTDYRDFEVDTLINNLKNDEGEQISYPILKVTITLEDGRV-IRARALNESTIKRIEKTMVADVVINQVVFERFRGDGILVSTPTGSTAYNKSLGGAVLHPTIEALQLTEISSLNNRVYRTLGSSVIIPKKDAIEIVPKRVGVYTISIDNKTVHYKNVTKIEYSIDEKSINFVSTPSHTSFWERVNDAFIGEPEH
2Q5F Chain:A ((2-264))
-----------KYMITSKGDEKSDLLRLNMIAGFG-EYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRPAEADKLVKLLAKGEYQKVSYPLLKTTVKY-----EATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDELSILHRDVQEIRYEVSAKKIHFARFRSF-PFWRRVHDSFIED---
General information:
TITO was launched using:
RESULT:
Template:
2Q5F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -153867 for 2092 contacts (-73.6/contact) +
2D Compatibility (PS) -27883 + (NN) -9746 + (LL) 1164
1D Compatibility (HY) -25200 + (ID) 6100
Total energy: -221632.0 ( -105.94 by residue)
QMean score : 0.546
(partial model without unconserved sides chains):
PDB file :
Tito_2Q5F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Q5F-query.scw
PDB file :
Tito_Scwrl_2Q5F.pdb
: