Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKKDKKIEIQISDAQVTVNGTKVDGYQLVIGKKIVGQIAELDSKFAVIKG-----EQVSGFYKNLDQAMGNIIEEYNLNR
2LMC Chain:A ((27-67))
------------------------------------GSLSVDNKKFWATVESSEHSFEVPIYAETLDEALELAEWQYVPAG
General information:
TITO was launched using:
RESULT:
Template:
2LMC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -622 for 200 contacts (-3.1/contact) +
2D Compatibility (PS) -3702 + (NN) 1933 + (LL) 2736
1D Compatibility (HY) -400 + (ID) 400
Total energy: -455.0 ( -2.27 by residue)
QMean score : 0.336
(partial model without unconserved sides chains):
PDB file :
Tito_2LMC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LMC-query.scw
PDB file :
Tito_Scwrl_2LMC.pdb
: