Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIVVPVMPRSLEEAQEIDLSKFDS-VDIIEWRADALPK----DDIINVAPAIFEKFAGHEIIFTLRTTREGGNIVLSDAEYVELIQKINSIYNPDYIDFEYFSHKEVFQEMLEFPN-----LVLSYHNFQETP--ENIMEIFSELTALAPRVVKIAVMPKNEQDVLDVMNYTRGFKTINPDQVYATVSMSKIGRISRFAGDVTGSSWTFAYLDSSIAPGQITISEMKRVKALLDAD
4GUH Chain:A ((41-273))
-KIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKAGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGQISVADLRTVLTILHQ-
General information:
TITO was launched using:
RESULT:
Template:
4GUH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128334 for 1841 contacts (-69.7/contact) +
2D Compatibility (PS) -24273 + (NN) -11290 + (LL) 132
1D Compatibility (HY) -16800 + (ID) 3500
Total energy: -184065.0 ( -99.98 by residue)
QMean score : 0.501
(partial model without unconserved sides chains):
PDB file :
Tito_4GUH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GUH-query.scw
PDB file :
Tito_Scwrl_4GUH.pdb
: