Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNSINIAIDGPASSGKSTVAKIIAKNLNYTYLDTGAMYRCATYLALQHGYEAQDVSKILGLLAERPISFGKAEDGSQTVFIGTEEVTLAIRQNDVTNNVSWVSAIPEIREELVNQQRRIAKDGAIIMDGRDIGTVVLPDAELKIFLVASVDERAERRFKENQEKGIESDFETLKSEIAARDYKDSHREVSPLKAAEDAIEFDTTGVSIEGVVTFIQEKAEKIIDMKN
3AKC Chain:A ((5-202))
-----VTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADG-EDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVPP--PFVAEGRDMGTAVFPEAAHKFYLTASPEVRAWRRARERPQA-----YEEVLRDLLRRDERDKAQSAP----APDALVLDTGGMTLDEVVAWVLAHIRR------
General information:
TITO was launched using:
RESULT:
Template:
3AKC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85079 for 1642 contacts (-51.8/contact) +
2D Compatibility (PS) -20862 + (NN) -6996 + (LL) 904
1D Compatibility (HY) -13200 + (ID) 3250
Total energy: -128483.0 ( -78.25 by residue)
QMean score : 0.462
(partial model without unconserved sides chains):
PDB file :
Tito_3AKC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AKC-query.scw
PDB file :
Tito_Scwrl_3AKC.pdb
: