Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPELPEVETVRKGLERLVVNQEIASITIKVPKMVKTDLNDFMISLPGKTIQQVLRRGKYLLFDFGE-MVMVSHLRMEGKYLLFPNKVPDNKHFHLYFKLTNGSTLVYQDVRKFGTFELVRKSSLKDYFTQKKLGPEPTADTFQFEPFSKGLANSKKPIKPLLLDQRLVAGLGNIYVDEVLWAAKIHPQRLANQLTESETSLLHKEIIRILTLGIEKGGSTIRTYKNALGEDGTMQKYLQVYGKTGQPCPRCGCLIKKIKVGGRGTHYCPRCQCL
1KFV Chain:A ((2-269))
--ELPEVETVRRELEKRIVGQKIISIEATYPRMVLTGFEQLKKELTGKTIQGISRRGKYLIFEIGDDFRLISHLRMEGKYRLATLDAPREKHDHLTMKFADGQ-LIYADVRKFGTWELISTDQVLPYFLKKKIGPEPTYEDFDEKLFREKLRKSTKKIKPYLLEQTLVAGLGNIYVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIEILQKAIKLGGSSI--------STGKMQNELQVYGKTGEKCSRCGAEIQKIKVAGRGTHFCPVCQQK
General information:
TITO was launched using:
RESULT:
Template:
1KFV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140021 for 2096 contacts (-66.8/contact) +
2D Compatibility (PS) -27718 + (NN) -12352 + (LL) 496
1D Compatibility (HY) -25600 + (ID) 7400
Total energy: -212595.0 ( -101.43 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_1KFV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KFV-query.scw
PDB file :
Tito_Scwrl_1KFV.pdb
: