Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEKDLLQLVVKAADEKRAEDIVILDLQPVTSVADYFVIMSASNSRQLEAIADNIREQVKGNGGDASHLEGDSKAGWVLLDLNSVVVHIFSEDERQHYNLEKLWHEAPLLDAEDFMTE
4WCW Chain:D ((24-114))
-------------------DDVVVIDVSGQLVITDCFVIASGSNERQVNAIVDEVEEKMRQAGYRPARREGAREGRWTLLDYRDIVVHIQHQDDRNFAALDRLWGDCPVVPVDL----
General information:
TITO was launched using:
RESULT:
Template:
4WCW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58262 for 603 contacts (-96.6/contact) +
2D Compatibility (PS) -10545 + (NN) -9530 + (LL) 2168
1D Compatibility (HY) -8400 + (ID) 1650
Total energy: -86219.0 ( -142.98 by residue)
QMean score : 0.753
(partial model without unconserved sides chains):
PDB file :
Tito_4WCW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WCW-query.scw
PDB file :
Tito_Scwrl_4WCW.pdb
: