Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVISMKQLLEAGVHFGHQTRRWNPKMAKYIFTERNGIHVIDLQQTVKLADQAYEFVRDAAANDAVILFVGTKKQAAEAVAEEAKRAGQYFINHRWLGGTLTNWGTIQKRIARLKEIKRMEEEGTFELLPKKEVALLNKQRARLEKFLGGIEDMPRIPDVMYVVDPHKEQIAVKEAKKLGIPVVAMVDTNADPDDIDVIIPANDDAIRAVKLITSKLADAVIEGRQG---EDADVDFAQEAQADSIEEIVEVVEGSNND
1XMQ Chain:B ((7-240))
-----VKELLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARGGVVEPSPSYALVQ--------------------
General information:
TITO was launched using:
RESULT:
Template:
1XMQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82718 for 1866 contacts (-44.3/contact) +
2D Compatibility (PS) -25595 + (NN) -17055 + (LL) 2092
1D Compatibility (HY) -22000 + (ID) 5900
Total energy: -151176.0 ( -81.02 by residue)
QMean score : 0.580
(partial model without unconserved sides chains):
PDB file :
Tito_1XMQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XMQ-query.scw
PDB file :
Tito_Scwrl_1XMQ.pdb
: