Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNTAPFIAIEGPIGAGKTTLATMLSQ-KFGFPMINEIV-----------EDNPYLDKFYDNIKEWSFQLEMFFLCHRYK--------QLEDTSDHFLKKGQPVIADYHIYKNVIFAERTLSPHQLEKYKKIYHLLTDDLPKP---NFIIYIKASLPTLLHRIEKRGRPFEKKIETSYLEQLISDYEV-----AIKQLQEADPELTVLTVDGDSKDFVLNKSDFERIAAHVKELIV
3MJR Chain:A ((43-276))
------ISIEGNIAAGKSTFVNILKQLSEDWEVVPEPVARWSNLTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFFERSVYSDRYIFASNLYESESMNETEWTIYQDWHDWMNNQFG-SLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVN-EDF---KDKYESLVEKVKEFL-
General information:
TITO was launched using:
RESULT:
Template:
3MJR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -80929 for 1413 contacts (-57.3/contact) +
2D Compatibility (PS) -20820 + (NN) -11225 + (LL) 832
1D Compatibility (HY) -17600 + (ID) 2850
Total energy: -132592.0 ( -93.84 by residue)
QMean score : 0.453
(partial model without unconserved sides chains):
PDB file :
Tito_3MJR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MJR-query.scw
PDB file :
Tito_Scwrl_3MJR.pdb
: