Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------------------------------------------------------------MYSKQWTRIILITSPFAIALSLLLSILYGAKHLSTDIVFTSL-IHFDPGNTDHQIIWHSRIPRAAGALLIGAALAVSGALMQGI----TRNYLASPSIMGVS---------------DGSAFIITLCMVLLPQSS---SIEMMIYSFIGSALGAVLVFG---LAAMMPNGF--TPVQLA-IIGTVTSMLLSSLSAAMSIY----------------FQISQDLSFWYSARLHQMSPDFLKLAAPFFLIGIIMAISLSKKVTAV-SLGDDISKSLGQKKKTIK------IMAMLSVIILTGSAVALAGKIAFVGLVVPHITRFLVGSDYSRLIPCSCILGGIFLTL-------CDLASRFINYPFETPIEVVTSIIGVPFFLYLIKRKGGEQNG---------------------- |
| 1BJ4 Chain:A ((1-470)) | DADLWSSHDAMLAQPLKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEP--HGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCYSRNLEYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVKSVDPATGKEILYNLESLINSAVFPGL-QGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIAC---NKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVAATLKEFKERLAGDKYQAAVQALREEVESFASLFPLPGL |
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General information:
TITO was launched using:
| RESULT:
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Template: 1BJ4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -310503 for 2727 contacts (-113.9/contact) +
2D Compatibility (PS) -33989 + (NN) -3747 + (LL) 440
1D Compatibility (HY) -3600 + (ID) 2450
Total energy: -353849.0 ( -129.76 by residue)
QMean score : 0.183
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