Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDKFLNNRWAVKIIALLFALLLYVAVNSNQAPTPKKPGESFFPTSTTDEATLTDIPVKAYYDDENYVVTGVPQTVNVTIKGSTSAVKKARQTKNFEIYADMEHLKTGTHKVELKAKNVSDGLTISINPSVTTVTIQERTTKSFPVEVEYYNKSKMKKGYSPEQPIVSPKNVQITGSKNVI--DNI----SLVKASVNLENADETIEKEAKVTVY-DKDGNALPVDVEPSVIKITVPVTSPSK-KVPFKIERTG-SLPDGVSIANIESSPSEVTVYGSQDVLDSLEFIDGVSLDLSK-INKDSDIEADIPLP--DGV---KKISPSKVTLHIEVDSEADQKFENVPIKTVGLSSSQNIEFLDPESQAIDVTAKGSPTNINKLKKSDIELYVNVSDLEDGEHSVKLEVNGPQNVTWSLGRKNAKIKLTSKKSNTSTNDNSSNTSGNQDTDKQTNDQKNNQQEDTKNTDKNNNDQNQDGNKDQNQDQDEDESTANSQSSSE |
| 4QDY Chain:A ((15-198)) | -----------------------------------------------------------------------------------------------------------------------------------------------NVPIDIRY---NSDKYFISG-FASEVSVVLTGANRLSLASEMQESTRKFKVTADLTDAGV-GTIEVPLSIEDLPNGLTA-V-ATPQKITVKIGKK-AQKDKVKIVPEIDPSQIDSRVQIENVMVSDKEVSITSDQETLDRIDKI-IAVLPTSERITGNYSGSVPLQAIDRNGVVLPAVITPFDTIMKVTTKPV------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4QDY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -23835 for 1106 contacts (-21.6/contact) +
2D Compatibility (PS) -18087 + (NN) -2900 + (LL) 13956
1D Compatibility (HY) -5200 + (ID) 1750
Total energy: -37816.0 ( -34.19 by residue)
QMean score : 0.392
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