Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKGYRILIVEDDVMIGDLLQKILQREGYRVIWKTDGADVL--SVIQKVDLVIMDVMLPGEDGYQMSAKIKKLGLGIPVIFLSARNDMDSKLQGLQIG-EDYMVKPFDPRELLLRMRNMLEHHYGTFTQIKHLYIDAVTKKVFNESLH---DEVLFTAIERKIFFYLYENRDSILTKEHFFEYLWQLEDRNPNIVNVHIKKIRAKINDQAGEMIENIYGEGYRLNTVVKK
4KNY Chain:A ((6-188))
-----VLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWS-AVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH----APDPLVKFSDVTVDLAARVIHRGEEEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVW-----GPNAV-----------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4KNY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -100025 for 1209 contacts (-82.7/contact) +
2D Compatibility (PS) -19256 + (NN) -12537 + (LL) 3584
1D Compatibility (HY) -13200 + (ID) 2900
Total energy: -144334.0 ( -119.38 by residue)
QMean score : 0.470
(partial model without unconserved sides chains):
PDB file :
Tito_4KNY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KNY-query.scw
PDB file :
Tito_Scwrl_4KNY.pdb
: