Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-----------------------MRAEEQSKIREAAAGTIFLLIGTVCFASKSIWIKWAYQMGAEPDAVLLY--RQLLAVPLFWLIFLIYRPPM-----PDGKKKGDLWKACGAGVFCFFLSPLLDFIGL-----NHVSAMVERILLMSYPLFVFGFTACRDRKMSSIQDLFAVLAVMFGLFLALGGWNAELFQANM--------IGAVFILLSSAVYAGYLVLSGHLVHQI-------------GGIRLNAYGMTAAGAAMMLYTGIKSAAGMN-------------------------------------TPMAAYPLSMYGLFAVIAVVTTVIPFVLMLEGIKRIGAQRAAAISMAGPILTIFYGALFLGERLGLIQVIGC---GGVFFVITGMEYRKLKTGKKE--
1RH5 Chain:A ((2-423))KKLIPILEKIPEVELPVKEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIPAIFEFWQTITASRIGTLITLGIGPIVTAGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAFGILTPLLAFLVIIQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVSQTIFVGALGPEGYLWKFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRMGIPILGHYEGGRAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGLDPKSMAKRISEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGALGGGTGVLLTVSIVYRMYEQLLRERT


General information:
TITO was launched using:
RESULT:

Template: 1RH5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1414 -271137 -191.75 -869.03
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain A : 0.61

3D Compatibility (PKB) : -191.75
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.61
QMean score : 0.195

(partial model without unconserved sides chains):
PDB file : Tito_1RH5.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1RH5-query.scw
PDB file : Tito_Scwrl_1RH5.pdb: