Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MFNINLLNQAR-LESDLDSLGCLDIAEELIEKMMEDVFYSDVAQRIIVQTLAVINNANAKLQATFNILEDEDMETDERSVEFEGISYYE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4NFU Chain:A ((15-633))AFEALTGINGDLITRSWSASKQAYLTERYHKEEAGAVVIFAFQPSFSEKDFFDPDNKSSFGEIKLNRVQFPCMRKIGKGDVATVNEAFLKNLEAVIDPRTSFQASVEMAVRSRKQIVFTGHSSGGATAILATVWYLEKYFIRNPNVYLEPRCVTFGAPLVGDSIFSHALGREKWSRFFVNFVTRFDIVPRITLARKASVEETLPHVLAQLDPRNSSVQESEQRITEFYTSVMRDTSTVANQAVCELTGSAEAILETLSSFLELSPYRPAGTFVFSTEKRLVAVNNSDAILQMLFYTCQASDEQEWSLIPFRSIRDHHSYEELVQSMGMKLFNHLDGENSIESSLNDLGVSTRGRQYVQAALEEEKKRVENQKKIIQVIQ-----QERFLKKLAWIEDE----YKPKCQAHKNGYYDSFKVSNEENDFKANVKRAELAGVFDEVLGLLKKCQLPDEFEGDIDWIKLATRYRRLVEPLDIANYHRHLKNEDTGPYMKRGRPTRYIYAQRGYEHHILKPNGMIAEDVFWNKVNGLNLGLQLEEIQETLKNSGSECGSCFWAEVEELKGKPYEEVEVRVKTLEGMLREWITAGEVDEKEIFLEGSTFRKWWITLPKNHKSHSPLRDYMMDEI


General information:
TITO was launched using:
RESULT:

Template: 4NFU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 97 -7781 -80.22 -98.49
target 2D structure prediction score : 0.65
Monomeric hydrophicity matching model chain A : 0.54

3D Compatibility (PKB) : -80.22
2D Compatibility (Sec. Struct. Predict.) : 0.65
1D Compatibility (Hydrophobicity) : 0.54
QMean score : 0.221

(partial model without unconserved sides chains):
PDB file : Tito_4NFU.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4NFU-query.scw
PDB file : Tito_Scwrl_4NFU.pdb: