Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMGKKVIVLGEIRDGELRNVTFEAIAA--GRTISGDGEVIGVLIGENVQSIAQELIHYGADKVLTAEDPKLKTYTADGYSQVMRGVIEQENPDSVIFGHTAMGKDLSPKLAARLQTGLISDAIDVSVTGGNVVFTRPIYSGKAFERV-ISTDPMIFATIRPNNIQASEKDTSRSGSIESIDVSLTDLRTVIQEVVK-KTADGVDLSEAKIIVAGGRGVKSKEGFQPLQELAEVLGAAVGASRGACDADYCDYALQIGQTGKVV-TPDLYIACGISGAIQHLAGMSNSKVIVAINKDPEADIFKIADYGIVGDLFEVVPLLTEEFKQLNIHS
3CLS Chain:D ((3-316))---KILVIAEHRRNDLRPVSLELIGAANGLKKSGEDKVVVAVIGSQADAFVPALSVNGVDELVVVKGSSID-FDPDVFEASVSALIAAHNPSVVLLPHSVDSLGYASSLASKTGYGFATDVYIVEYQGDELVATRGGYNQKVNVEVDFPGKSTVVLTIRPSVFKPLEG--AGSPVVSNVDAPSVQSRSQNKDYVEVGGGNDIDITTVDFIMSIGRGIGEETNVEQFRELADEAGATLCCSCPIADAGWLPKSRQVGQSGKVVGSCKLYVAMGISGSIQHMAGMKHVPTIIAVNTDPGASIFTIAKYGIVADIFDI----EEELK------


General information:
TITO was launched using:
RESULT:

Template: 3CLS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 1715 4720 2.75 15.27
target 2D structure prediction score : 0.56
Monomeric hydrophicity matching model chain D : 0.79

3D Compatibility (PKB) : 2.75
2D Compatibility (Sec. Struct. Predict.) : 0.56
1D Compatibility (Hydrophobicity) : 0.79
QMean score : 0.574

(partial model without unconserved sides chains):
PDB file : Tito_3CLS.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3CLS-query.scw
PDB file : Tito_Scwrl_3CLS.pdb: