Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTGSVDRPDQNRGERSMKSPGLDLVRRTLDEARAAARARGQDAGRGRVASVASGRVAGRRRSWSGPGPDIRDPQPLGKAARELAKKRGWSVRVAEGMVLGQWSAVVGHQIAEH---ARPTALNDGVLSVIAESTAWATQL--RIMQAQLLAKIAAAVGNDVVRSLKITGPAAPSWRKGPRHIAGRGPRDTYG
2M5O Chain:A ((28-92))
------------------------------------------------------------------------------------------------------DTRIRPTVQEDGGDVIYKGFEDGIVQLKLQGSCTSCPSSIITLKNGIQNMLQFYIPE--VEGVEQVM-----------------------
General information:
TITO was launched using:
RESULT:
Template:
2M5O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37820 for 365 contacts (-103.6/contact) +
2D Compatibility (PS) -6518 + (NN) -2478 + (LL) 4940
1D Compatibility (HY) -2000 + (ID) 200
Total energy: -44076.0 ( -120.76 by residue)
QMean score : 0.280
(partial model without unconserved sides chains):
PDB file :
Tito_2M5O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2M5O-query.scw
PDB file :
Tito_Scwrl_2M5O.pdb
: