Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADCDSVTNSPLATATATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGGP----------------------------GYKFADEFHPELQFDKPYLLAMANAG-PGTNGSQFFITVGKTPHLNRRHTIFGEVIDAES-QRVVEAISKTATDGNDRPTDPVVIESITIS
4R3F Chain:A ((11-197))
---------EPQPTGAVIIHTTQGDLKVELFAKQTPLTCRNFL-----------QHSLDG----YYDGTIFHRLVPGFIIQGGDPTGTGHGGESIYDGGAFSGDLDPWPMDQRKGHNAGPMGVNFKDEFHSRLKFNRRGLLGMANEGAPDTNGSQFFFTLGKAEELNNKNTLFGRVAAGDTIYNLMKWGEAELIEGTERPQYPVKITNIEI-
General information:
TITO was launched using:
RESULT:
Template:
4R3F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73296 for 1243 contacts (-59.0/contact) +
2D Compatibility (PS) -16996 + (NN) -10371 + (LL) 136
1D Compatibility (HY) -13600 + (ID) 3700
Total energy: -117827.0 ( -94.79 by residue)
QMean score : 0.666
(partial model without unconserved sides chains):
PDB file :
Tito_4R3F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4R3F-query.scw
PDB file :
Tito_Scwrl_4R3F.pdb
: