Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVSGSDSRSEPSQLSDRDLVESVLRDLSEAADKWEALVTQAETVTYSVDLGDVRAVANSDGRLLELTLHPGVMTGY-----AHGELADRVNLA----ITALRDEVEAENRARYGGRLQ
1JNE Chain:A ((179-238))
---------------------------------------------------DVKDSLRADGFLLSLTVLPNVNSTWYFDIPALNGLVDFVNLATFDFLTPARNPEEADYSA-------
General information:
TITO was launched using:
RESULT:
Template:
1JNE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5504 for 213 contacts (-25.8/contact) +
2D Compatibility (PS) -5054 + (NN) 1990 + (LL) 3572
1D Compatibility (HY) -2800 + (ID) 1100
Total energy: -8896.0 ( -41.77 by residue)
QMean score : 0.041
(partial model without unconserved sides chains):
PDB file :
Tito_1JNE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JNE-query.scw
PDB file :
Tito_Scwrl_1JNE.pdb
: