Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKSSKRRPAPEKPVKTRKCVFCAKKDQAIDYKDTALLRTYISERGKIRARRVTGNCVQHQRDIALAVKNAREVALLPFTSSVR
4DR4 Chain:R ((16-85))
--------PSRKAKVKATLGEFDLR-----DYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFTEKL-
General information:
TITO was launched using:
RESULT:
Template:
4DR4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3373 for 406 contacts (-8.3/contact) +
2D Compatibility (PS) -7356 + (NN) -2879 + (LL) 1180
1D Compatibility (HY) -3200 + (ID) 1350
Total energy: -16978.0 ( -41.82 by residue)
QMean score : 0.270
(partial model without unconserved sides chains):
PDB file :
Tito_4DR4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DR4-query.scw
PDB file :
Tito_Scwrl_4DR4.pdb
: