Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -------MITRYKPESGFVARSGGPDRKRPHDWIVWHFTHADNLPGIITAGRLLADSAVTPTTEVAYNPVKELRRHKVVAPDSR--------YPASMASDHV--PFYIAARSPML--YVVCKGHSGYSGGAGP-LVHLGVALGDIIDAD----------------------LTWCASDGNAAASYTKFSRQVDTLGTFVDFDLL--------CQRQWHNTDDDPNRQSRRAAEILVYGHVPFELVSYVCCYNTETMTRVRTLLDPVGGVRKYVIKPGMYY------------------------------------------------------------ |
| 3H5N Chain:A ((4-350)) | MDYILGRYVKIARYGSGGLVGGGGKEQYVE-NLVLWENIIKTAYCFITPSSYTAALETANIPEKDFSNCFRFLKENFFIIPGEYNNSTENNRYSRNFLHYQSYGANPVLVQDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIALNINDYTDLHKVPEADIWVVSADHPFNLINWVNKYCVRANQPYINAG-YVNDIAVFGPLYVPGKTGCYECQKKENIDHKIKLINSRFKPATFAPVNNVAAALCAADVIKFIGKYSEPLSLNKRIGIWSDEIKIHSQNMGRSPVCSVCG |
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General information:
TITO was launched using:
| RESULT:
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Template: 3H5N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -13656 for 1502 contacts (-9.1/contact) +
2D Compatibility (PS) -23094 + (NN) 5131 + (LL) 236
1D Compatibility (HY) -3200 + (ID) 1450
Total energy: -36033.0 ( -23.99 by residue)
QMean score : 0.109
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