Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDQPWNANIHYDALLDAMVPLGTQCVLDVGCGDGLLAARLARRIPYVTAVDIDAPVLRRAQTRFAN-APIRWLHADIM---TAELPNAGFDAVVSNAALHHIED---TRTALSRLGGLVTPGGTLAVVTFVTPSLRNGLWHLTSWVACGMANRVKGKWEHSAPIKWPPPQTLHELRSHVRALLPGACIRRLLYGRVLVTWRAPV
3OFJ Chain:A ((24-143))
-DNPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAEL----FDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHL-------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3OFJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78380 for 802 contacts (-97.7/contact) +
2D Compatibility (PS) -12011 + (NN) -5456 + (LL) 5832
1D Compatibility (HY) -6400 + (ID) 1800
Total energy: -98215.0 ( -122.46 by residue)
QMean score : 0.390
(partial model without unconserved sides chains):
PDB file :
Tito_3OFJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OFJ-query.scw
PDB file :
Tito_Scwrl_3OFJ.pdb
: