Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVTVGVICAIPQELAYLRGVL-VDAKRQQVAQILFDSGQLDAHRVVLAAAGMGKVNTGLTATLLADRFGCRTIVFTGVAGGLDPELCIGDIVIADRVVQHDFGLLTDERLRPYQPGHIPFIEPTERLGYPVDPAVIDRVKHRLDGFTLAPLSTAAGGGGRQPRIYYGTILTGDQYLHCERTRNRLHHELGGMAVEMEGGAVAQICASFDIPWLVIRALSDLAGADSGVDFNRFVGEVAASSARVLLRLLPVLTAC
4YO8 Chain:A ((19-245))
----IGILGAMREEITPILELFGVDFEEIPLGGNVFHKGVYHNKEIIVAYSKIGKVHSTLTTTSMILAFGVQKVLFSGVAGSLVKDLKINDLLVATQLVQHDVDLSAFDHPLGFIPESAIFIETSGSLN-----ALAKKIANE-----------------QHIALKEGVIASGDQFVHSKERKEFLVSEFKASAVEMEGASVAFVCQKFGVPCCVLRSISDNADEKAGMSFDEFLEKSAHTSAKFLKSMVDEL---
General information:
TITO was launched using:
RESULT:
Template:
4YO8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -209636 for 2011 contacts (-104.2/contact) +
2D Compatibility (PS) -23897 + (NN) -6395 + (LL) 868
1D Compatibility (HY) -20400 + (ID) 3450
Total energy: -262910.0 ( -130.74 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_4YO8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YO8-query.scw
PDB file :
Tito_Scwrl_4YO8.pdb
: