Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGEFDPKLR--FAQSPVARLATSTPDGTPHLVPVVFALGARRPAEATGADVIYTAVDAKRKTTQRLRRLANLEHNPRASVLVDSYADDWTQLWWVRADGVAAIHRDGEVMRAAYRLLRAKYAQYQSVPLNGPVIAIAVQRWASWHA
1Y30 Chain:B ((6-88))
---FDDKLLAVISGNSIGVLATIKHDGRPQLSNVQYHFDPRKL-------LIQVSIAEPRAKTRNLRR------DPRASILVDA-DDGWS---YAVAEGTAQL-------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1Y30.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34853 for 478 contacts (-72.9/contact) +
2D Compatibility (PS) -9201 + (NN) -5646 + (LL) 5520
1D Compatibility (HY) -5600 + (ID) 1550
Total energy: -51330.0 ( -107.38 by residue)
QMean score : 0.332
(partial model without unconserved sides chains):
PDB file :
Tito_1Y30.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y30-query.scw
PDB file :
Tito_Scwrl_1Y30.pdb
: