Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTSNQK---AILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHGTHAEAVEIIFDPTVTDYRTLLEFFFQIHDPT--TKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEASGLWPGKVVTEVSPAGDFWEAEPEHQDYLQRYPNGYTCHFVRPGWRLPRRTAESALRASLSPELGT
4LWM Chain:A ((6-140))
-----KLSIAVFALGCFWGPDAQFGSIKGVVSTRVGYAGGTTNNPSYYNLGDHSDSIEIQYDANVITYGELLNIFWNLHNPVYETTNRQ-------YMSRIFYLDDGQKSEALEMKRQIEAAN--GEKIYTEIVPLENFYLAEGYHQKY--------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4LWM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67775 for 959 contacts (-70.7/contact) +
2D Compatibility (PS) -14536 + (NN) -13559 + (LL) 2148
1D Compatibility (HY) -11600 + (ID) 2950
Total energy: -108272.0 ( -112.90 by residue)
QMean score : 0.805
(partial model without unconserved sides chains):
PDB file :
Tito_4LWM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LWM-query.scw
PDB file :
Tito_Scwrl_4LWM.pdb
: