Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGMDQQPNPPDVDAFLDSTLVGDDPALAAALAASDAAELPRIAVSAQQGKFLCLLAGAIQARRVLEIGTLGGFSTIWLARGAGPQGRVVTLEYQPKHAEVARVNLQRAGVADRVEVVVGPALDTLPTL-----AGGPFDLVFIDADKENNVAYIQWAIRLARRGAVIVVDNVIRGGGILAESDDADAVAARRTLQMMGEHPGLDATAIQTVGRKGWDGFALALVR
1SUS Chain:A ((61-202))
-----------------------------------------MTTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADKDNYLNYHKRLIDLVKVGGVIGYDNTLWNGSVVAPPD------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1SUS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -88870 for 999 contacts (-89.0/contact) +
2D Compatibility (PS) -15412 + (NN) -9186 + (LL) 4936
1D Compatibility (HY) -10400 + (ID) 2150
Total energy: -121082.0 ( -121.20 by residue)
QMean score : 0.400
(partial model without unconserved sides chains):
PDB file :
Tito_1SUS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SUS-query.scw
PDB file :
Tito_Scwrl_1SUS.pdb
: