Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLAAEPHPAPPQQPTVAWSEPDVDRRVEFWPTVAIRSALESGDIATWQRIAAALKRDPYGRTARQVEEVLEGIPATGIANAFWEVLDRARTHLDANERAEVARQVGLLLDRSGLQRQEFASRIGVTAQDLTAYLDGIVSPSASLMIRMRRLSDRFVRAKSVRAADS
3U3W Chain:A ((3-54))
--------------------------------------------------------------------------------------------------AEKLGSEIKKIRVLRGLTQKQLSENI-CHQSEVSRIESGAVYPSMDILQGIAA----------------
General information:
TITO was launched using:
RESULT:
Template:
3U3W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -31669 for 329 contacts (-96.3/contact) +
2D Compatibility (PS) -5569 + (NN) -2025 + (LL) 8176
1D Compatibility (HY) -3200 + (ID) 350
Total energy: -34637.0 ( -105.28 by residue)
QMean score : 0.842
(partial model without unconserved sides chains):
PDB file :
Tito_3U3W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U3W-query.scw
PDB file :
Tito_Scwrl_3U3W.pdb
: