Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRILVTGGVRSGKSTHAEALLGDAADVVYVAPGRPAAGSDPDWDARVALHRARRPPTWLTVE---------TADVATALSEARSPVLVDCLGTWLTAIMDGEALWSAATADVYAVLEARLDG----LCAALTGLPTAIV-VTNEVGLGVVPSHSSGVLFRDLLGTINRRVAAVCDEVHLVIAGRVLKL
1CBU Chain:B ((2-179))
--ILVTGGARSGKSRHAEALIGDAPQVLYIATSQIL---DDEMAARIQHHKDGRPAHWRTAECWRHLDTLITADLAP-----DDAILLECITTMVTNLLFALGGENDPEQWDYAAMERAIDDEIQILIAACQRCPAKVVLVTNEVGMGIVPENRLARHFRDIAGRVNQRLAAAADEVWLVVSGIGVKI
General information:
TITO was launched using:
RESULT:
Template:
1CBU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85582 for 1143 contacts (-74.9/contact) +
2D Compatibility (PS) -17818 + (NN) -1015 + (LL) 792
1D Compatibility (HY) -12800 + (ID) 3600
Total energy: -120023.0 ( -105.01 by residue)
QMean score : 0.482
(partial model without unconserved sides chains):
PDB file :
Tito_1CBU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CBU-query.scw
PDB file :
Tito_Scwrl_1CBU.pdb
: