Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGVPAKKKQQQGERSRESILDATERLMATKGYAATSISDIRDACGLAPSSIYWHFGSKEGVLAAMMERGAQRFFAAIPTWDEAHGPVEQRSERQLTELVSLQSQHPDFLRLFYLLSME------------RSQDPAVAAVVRRVRNTAIARFRDSITHLLPSDIP----PGKADLVVAELTAFAVALSDGVYFAGHLEPDTTDVERMYRRLRQALEALIPVLLEET
2UXO Chain:A ((5-187))
-------TKEEAQETRAQIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNNKAELVQALLD-----------SLHETHDHLARASESE-DEVDPLGCMRKLLLQVFNELVLDARTRRINEILHHKCEFTDDMCEIRQQRQSAVLDCHKGITLALANAVRRGQLPGELDAERAAVAMFAYV--DGLIRRWLLLPDSVDL----------------------
General information:
TITO was launched using:
RESULT:
Template:
2UXO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -32979 for 1085 contacts (-30.4/contact) +
2D Compatibility (PS) -17539 + (NN) -4345 + (LL) 4304
1D Compatibility (HY) -10000 + (ID) 2250
Total energy: -62809.0 ( -57.89 by residue)
QMean score : 0.302
(partial model without unconserved sides chains):
PDB file :
Tito_2UXO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2UXO-query.scw
PDB file :
Tito_Scwrl_2UXO.pdb
: