Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVHLTRIYTRTGDDGTTGLSDMSRVAKTDARLVAYADCDEANAAIGAALALGHPDTQI-TDVLRQIQNDLFDAGADLSTPIVENPKHPPLRIAQSYIDRLEGWCDAYNAGLPALKSFVLPGGSPLSALLHVARTVVRRAERSAWAAVDAHPEGVSVLPAKYLNRLSDLLFILSRVAN---PDGDVLWRPGGDRTAS
3GAH Chain:A ((8-191))
------KIYTKNGDKGQTRIIGKQILYKNDPRVAAYGEVDELNSWVGYTKSLINSHTQVLSNELEEIQQLLFDCGHDLATPADDERHSFKFKQEQPTV-WLEEKIDNYTQVVPAVKKHILPGGTQLASALHVARTITRRAERQIVQLMREEQINQDVLI--FINRLSDYFFAAARYANYLEQQPDMLYRNSKD----
General information:
TITO was launched using:
RESULT:
Template:
3GAH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65120 for 1331 contacts (-48.9/contact) +
2D Compatibility (PS) -19767 + (NN) -15176 + (LL) 1216
1D Compatibility (HY) -10800 + (ID) 3450
Total energy: -113097.0 ( -84.97 by residue)
QMean score : 0.388
(partial model without unconserved sides chains):
PDB file :
Tito_3GAH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GAH-query.scw
PDB file :
Tito_Scwrl_3GAH.pdb
: