Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAEHDFETISSETLHTGAIFALRRDQVRMPGGGIVTREVVEHFGAVAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTWQVLVDLDTAPGFSDESVRVYLATGLREVGRPEAHHEEAD-MTMGWYPIAEAARRVLRGEI-VNSIAIAGVLAVHAVTTGFAQPRPLDTEWIDRPTAFAARRAER
1V8R Chain:A ((29-169))
-------------------------------------EIVEHKPAVAVIALRE-GRMLFVRQMRPAVGLAPLEIPAGLIE-PGEDPLEAARRELAEETGL-SGDLTYLFSYFVSPGFTDEKTHVFLAENLKEV---EA------AIEVVWMRPEEALERHQRGEVEFSATGLVGVLYYHAFLRG-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1V8R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76830 for 980 contacts (-78.4/contact) +
2D Compatibility (PS) -14526 + (NN) -4341 + (LL) 4816
1D Compatibility (HY) -11600 + (ID) 2800
Total energy: -105281.0 ( -107.43 by residue)
QMean score : 0.625
(partial model without unconserved sides chains):
PDB file :
Tito_1V8R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1V8R-query.scw
PDB file :
Tito_Scwrl_1V8R.pdb
: