Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSRLSAAVVAIDGPAGTGKSSVSRRLARELGARFLDTGAMYRIVTLAVLRAGADPSDIAAVETIASTVQMSLGYDPDGDSCYLAGEDVSVEIRGDAVTRAVSAVSSVPAVRTRLVELQRTMAEGPGSIVVEGRDIGTVVFPDAPVKIFLTASAETRARRRNAQNVAAGLADDYDGVLADVRRRDHLDSTRAVSPLQAAGDAVIVDTSDMTEAEVVAHLLELVTRRSEAVR
3AKC Chain:A ((4-208))
-------IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGEDLTSFLHTPEVDRVVSAVARLPGVRA---WVNRRLKEVPPPFVAEGRDMGTAVFPEAAHKFYLTASPEVRAWRRARERPQA-----YEEVLRDLLRRDERDKAQSAP----APDALVLDTGGMTLDEVVAWVLAHIRR------
General information:
TITO was launched using:
RESULT:
Template:
3AKC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114142 for 1712 contacts (-66.7/contact) +
2D Compatibility (PS) -22670 + (NN) -14692 + (LL) 2092
1D Compatibility (HY) -14000 + (ID) 4300
Total energy: -167712.0 ( -97.96 by residue)
QMean score : 0.523
(partial model without unconserved sides chains):
PDB file :
Tito_3AKC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AKC-query.scw
PDB file :
Tito_Scwrl_3AKC.pdb
: