Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIEPQHAVNIVLKEAARSGRADETMVLVTEKVEATLRWAGNSMTTNGVSHSRNVTVISIVRRGDSAFVGSVVSAEVDPSVLPGLVVSSQDAARSAPEAGDAAPLLADTGEP-------DDWDAPVPGTGAGVFTGIAGSLSRG-FR--GAD-RLYGYAHRSVSTTFLASSTGLRRRYTQPTGAIEINAKRGDA-S----AWVGIGTPDFVEVPIDLMLERLSTRLRWAQRTVELPAGRYQTIMPPSTVADMMIYLGWSMAGRGAQEGRTAFSAPGGGTRVGERLTELPLTLFTDPAAPGLAC-TPFVAVSNSSETQSVFDNGMEISQVDWIRSGVINALAYPRATAAKFDAPVAVAAD-NLIMTGGSADLADMIAGTERGLLLTTLWYIREVDPTTLLLTGLTRDGVYLVEDGEVSAAVNNFRFNESPLDLLRRATEAGVSEPTLPREWSDWVTRTAMPPLRIPDFHMSSVSQAQ |
1VPB Chain:A ((19-451)) | ----KKLAQWAMDYALK-NGCQAAKVLLYSSSNTSFELRD--MDRLQQASEGGLSLSLYVDGR----YGSISTNRLNRKELETFIKNGIDSTRYLAKDEAR-VLADPSRYYKGGKPDLKLYDAKFASLNPDDKIEMAKAVAEEALGKDERIISVGSSYGDGEDFAYRLISNGFEGETKSTWYSLSADITIRGEGEARPSAYWYESSLYMNDLIKKGIGQKALERVLRKLGQKKVQSGKYTMVVDPMNSSRLLSPMISALNGSALQQKNSFLL-NKL----NEKIASDRLTLTDEPHLVKASGARYFDN------------EGIATERRSIFDKGVLNTYFIDTYNAKKMGVDPTISGSSILVMETGDKNLDGLIAGVEKGILVTGFNGGN-NNSSTGDFSYGIE-G-FLIENGKLTQPVSEMNVTGNLITLWNSLVATGNDPRLNS--------SWRIPSLVFEGVDFSGL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VPB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -185042 for 3375 contacts (-54.8/contact) +
2D Compatibility (PS) -44201 + (NN) -21322 + (LL) 2628
1D Compatibility (HY) -14400 + (ID) 2800
Total energy: -265137.0 ( -78.56 by residue)
QMean score : 0.315
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