Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTNPFDDDNGAFFVLVNDEDQHSLWPVFADIPAGWRVVHGEASRAACLDYVEKNWTDLRPKSLRDAMVED
2MYY Chain:A ((8-77))
MSDNPFDDEDGMFFVLINDEEQHSLWPTFADVPAGWRVVFGEASRASCVEYVDQHWTDIRPKSLREKLAS-
General information:
TITO was launched using:
RESULT:
Template:
2MYY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24462 for 370 contacts (-66.1/contact) +
2D Compatibility (PS) -7466 + (NN) -4989 + (LL) -76
1D Compatibility (HY) -8000 + (ID) 2450
Total energy: -47443.0 ( -128.22 by residue)
QMean score : 0.412
(partial model without unconserved sides chains):
PDB file :
Tito_2MYY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2MYY-query.scw
PDB file :
Tito_Scwrl_2MYY.pdb
: