Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQ---FNLVHGSDSAESAQREIALWFPGA
2DYA Chain:A ((7-140))
-TERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDP-KDAAPGTIRGDFGLEVSDAICNVIHASDSKESAEREISLFF---
General information:
TITO was launched using:
RESULT:
Template:
2DYA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76428 for 1017 contacts (-75.2/contact) +
2D Compatibility (PS) -14130 + (NN) -4932 + (LL) 232
1D Compatibility (HY) -16000 + (ID) 3800
Total energy: -115058.0 ( -113.13 by residue)
QMean score : 0.590
(partial model without unconserved sides chains):
PDB file :
Tito_2DYA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DYA-query.scw
PDB file :
Tito_Scwrl_2DYA.pdb
: