Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAYLDHAATTPMHPAAIE-AMAAVQRTIGNASSLHTSGRSARRRIEEARELIADKLGARPSEVIFTAGGTESDNLAVKGI--YWARRDAEPHRRRIVTTEVEHHAVLDSVNWLVEHEGAHVTWLPTAADGSVSATALREALQSHDDVALVSVMWANNEVGTILPIAEMSVVAMEFGVPMHSDAIQAVGQLPLDFGASGLSAMSVAGHKFGGPPGVGALLLRR-------DVTCVPLMHGGGQERDIRSGTPDVASAVGMATAAQIAVDGLEENSARLRL----LRDRLVEGVLAEIDDVCLNGADDPMRLAGNAHFTFRGCEGDALLMLLDANGIECSTGSACTAGVAQPSHVLIAMGVDAASARGSLRLSLGHTSVEADVDAALEVLPGAVARARRAALAAAGASR |
| 3VAX Chain:A ((22-375)) | -TYLDAAATTRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYGERTG----RRHIITSAIEHKAVLEPLEHLA-GRGFEVDFLTPGPSGRISVEGVMERLRP--DTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDL-TTPIDMISISGHKIGAPKGVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMGLAEAAKI----FEAEHAQWQVAAQDLRSRLLAGLAS--TSFQVNGDQDHV-VPHILNLSFEDVDAEAFLVTLK-DLVAVATGSASTSASFTPSHVLRAMGLPEEAASKSLRFS------------------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3VAX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -174438 for 2866 contacts (-60.9/contact) +
2D Compatibility (PS) -37581 + (NN) -20674 + (LL) 3940
1D Compatibility (HY) -23600 + (ID) 6750
Total energy: -259103.0 ( -90.41 by residue)
QMean score : 0.447
|
|
|