Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPDVDWNMLRGNATQAAAGAYVPYSRFAVGAAALVDDGRVVTGCNVENVSYGLTLCAECAVVCALHSTGGGRLLALACV-DGHGSVLMPCGRCRQVLLEHGGSELLIDHPVRP------RRLGDLLPDAFGLDDLPRERR
1MQ0 Chain:A ((16-136))
------------SQEAKQSAYCPYSHFPVGAALLTQEGRIFKGCNIENACYPLGICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPV--YMTKPDGTYIVMTVQELLPSSFGPEDL-----
General information:
TITO was launched using:
RESULT:
Template:
1MQ0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73896 for 859 contacts (-86.0/contact) +
2D Compatibility (PS) -12858 + (NN) -7128 + (LL) 808
1D Compatibility (HY) -6800 + (ID) 2350
Total energy: -102224.0 ( -119.00 by residue)
QMean score : 0.312
(partial model without unconserved sides chains):
PDB file :
Tito_1MQ0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MQ0-query.scw
PDB file :
Tito_Scwrl_1MQ0.pdb
: