Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVGVLVAAATPIISSASATPANIAGMVVFIDPGHNGANDASIGRQVPTGRGGTKNCQASGTSTN-SGYPEHTFTWETGLRLRAALNA-LGVRTALSRGNDNALGPCVDERANMANALRPNAIVSLHADGGP-ASGRGFHVNYSAPPLNAIQAGPSVQFARIMRDQLQA-SGIPKANYIGQDGLYGRSDLAGLNLAQYPSILVELGNMKNPADSALMESAEGRQKYANALVRGVAGFLATQGQAR
1JWQ Chain:A ((2-178))
--------------------------KVVVIDAGHGAKD--------------------SGAVGISRKNYEKTFNLAMALKVESILKQNPKLEVVLTRSDDTFL--ELKQRVKVAENLKANVFVSIHANSSGSSASNGTETYYQRS--------ASKAFANVMHKYFAPATGLT------DRGIRY-GNFHVIRETTMPAVLLEVGYLSNAKEEATLFDEDFQNRVAQGIADGITEYLDV-----
General information:
TITO was launched using:
RESULT:
Template:
1JWQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -64811 for 1525 contacts (-42.5/contact) +
2D Compatibility (PS) -19239 + (NN) -13951 + (LL) 3184
1D Compatibility (HY) -11200 + (ID) 2100
Total energy: -108117.0 ( -70.90 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_1JWQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JWQ-query.scw
PDB file :
Tito_Scwrl_1JWQ.pdb
: